arboreto

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse expression inputs, and network stability checks.

Install

KitScout test notes

Not tested by KitScout yet. When our harness runs it, pros, cons and the tasks we tried appear here, with the date and evidence.

Similar tools

• reverse-engineer-anything 456,653 ★
  Reverse engineer native, managed, Electron/JavaScript, packaged, firmware, and browser targets with REA, and b
• scaffold-exercises 323,485 ★
  Create exercise directory structures with sections, problems, solutions, and explainers that pass linting. Use
• wait-what 323,485 ★
  Stop. That last message did not land: re-pitch it.
• template-skill 193,970 ★
  Replace with description of the skill and when Claude should use it.
• ponytail-debt 190,107 ★
  List every `shortcut:` comment (and older `ponytail:` ones) as a debt ledger. One-shot report, changes nothing