KitScout

Categories › Other › Does not fit any category

cellxgene-census

SkillInstall · skills CLI

Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

Install

KitScout test notes

Not tested by KitScout yet. When our harness runs it, pros, cons and the tasks we tried appear here, with the date and evidence.

Similar tools

  • reverse-engineer-anything 456,653 ★
    Reverse engineer native, managed, Electron/JavaScript, packaged, firmware, and browser targets with REA, and b
  • scaffold-exercises 323,485 ★
    Create exercise directory structures with sections, problems, solutions, and explainers that pass linting. Use
  • wait-what 323,485 ★
    Stop. That last message did not land: re-pitch it.
  • template-skill 193,970 ★
    Replace with description of the skill and when Claude should use it.
  • ponytail-debt 190,107 ★
    List every `shortcut:` comment (and older `ponytail:` ones) as a debt ledger. One-shot report, changes nothing